PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03245.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 249aa    MW: 28421.1 Da    PI: 9.5258
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03245.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.44.2e-51141381128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                              lppGfrFhPtdeelvv+yLk+kv  ++l++ ++i+++d+++++PwdLp +    eke yfFs+r+ ky++g+r+nrat sgyWkat
  Rsa1.0_03245.1_g00001.1  14 LPPGFRFHPTDEELVVQYLKRKVLCSPLPA-SIIPDFDVCRADPWDLPGN---LEKERYFFSTREAKYPNGNRSNRATGSGYWKAT 95 
                              79****************************.89***************44...4789***************************** PP

                      NAM  87 gkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                              g dk+v+++ +++ vglkktLvfykg+ p+g++tdW+mheyrl
  Rsa1.0_03245.1_g00001.1  96 GIDKRVVTSrGNQIVGLKKTLVFYKGKPPHGSRTDWIMHEYRL 138
                              ***99998857777***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.89E-6010160IPR003441NAC domain
PROSITE profilePS5100558.28814160IPR003441NAC domain
PfamPF023653.6E-2715138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010089Biological Processxylem development
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MDKVKLVKNG VMRLPPGFRF HPTDEELVVQ YLKRKVLCSP LPASIIPDFD VCRADPWDLP  60
GNLEKERYFF STREAKYPNG NRSNRATGSG YWKATGIDKR VVTSRGNQIV GLKKTLVFYK  120
GKPPHGSRTD WIMHEYRLSS SPPSSMGPTQ NWVLCRIFLK KRAGNKSDDD DGDNRSIRYD  180
NDQIEIITTN QTEDKTKPIF FDFMRKERTT DLNLLPSSPS SDHASSGLTT ELFSSDEETS  240
SCNSFRRNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-511216615171NO APICAL MERISTEM PROTEIN
1ut4_B2e-511216615171NO APICAL MERISTEM PROTEIN
1ut7_A2e-511216615171NO APICAL MERISTEM PROTEIN
1ut7_B2e-511216615171NO APICAL MERISTEM PROTEIN
3swm_A3e-511216618174NAC domain-containing protein 19
3swm_B3e-511216618174NAC domain-containing protein 19
3swm_C3e-511216618174NAC domain-containing protein 19
3swm_D3e-511216618174NAC domain-containing protein 19
3swp_A3e-511216618174NAC domain-containing protein 19
3swp_B3e-511216618174NAC domain-containing protein 19
3swp_C3e-511216618174NAC domain-containing protein 19
3swp_D3e-511216618174NAC domain-containing protein 19
4dul_A2e-511216615171NAC domain-containing protein 19
4dul_B2e-511216615171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00507DAPTransfer from AT5G13180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9578370.0JF957837.1 Brassica napus NAC5 mRNA, complete cds.
GenBankKC9667590.0KC966759.1 Brassica napus NAC transcription factor 83 (NAC83.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013667953.11e-171PREDICTED: NAC domain-containing protein 83
RefseqXP_013608832.11e-171PREDICTED: NAC domain-containing protein 83
SwissprotQ9FY931e-151NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A078F9L01e-171A0A078F9L0_BRANA; BnaC09g43890D protein
TrEMBLA0A0D3EFU81e-171A0A0D3EFU8_BRAOL; Uncharacterized protein
STRINGBra023395.1-P1e-164(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18062786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-148NAC domain containing protein 83